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Table S1. List of species and subspecies of Trinomys currently recognized and not recognized (Status) with corresponding type locality (municipality and/or locality and Brazilian state) and description date and author.

Table S2. Taxonomic rearrangements of Trinomys .

Table S3. List of analysed species with e28-vWF with haplotype (H), locality (Brazilian state, municipality and/ or locality), field or museum number, GenBank accession number, and reference (Ref.)

Table S4. Average molecular distance (p) for each pair of lineages recognized for bPTP with mt-Cytb in Figure 2. Table S5. Average molecular distance (p) for each pair of lineages recognized in GMYC with mt-Cytb in Figure 2.