identifier	taxonID	type	CVterm	format	language	title	description	additionalInformationURL	UsageTerms	rights	Owner	contributor	creator	bibliographicCitation
03AE6A28AD3B574AFF31FBC3FB52F9D9.text	03AE6A28AD3B574AFF31FBC3FB52F9D9.taxon	http://purl.org/dc/dcmitype/Text	http://rs.tdwg.org/ontology/voc/SPMInfoItems#GeneralDescription	text/html	en	Colletotrichum acutatum	<div><p>C. acutatum species complex</p> <p>For the 6-locus (ITS, GAPDH, CHS-1, HIS3, ACT, TUB2) phylogenetic analysis of the C. acutatum species complex, 38 reference sequences were downloaded from GenBank (Table 1) and one isolate obtained from V. dunalianum var. urophyllum in this study. The multi-gene dataset (gene boundaries of ITS: 1−558, GAPDH: 559−811, CHS- 1: 812−1084, HIS3: 1085−1471, ACT: 1472−1697, TUB2: 1698−2187) comprised 2187 characters including the alignment gaps, of which 250 were parsimony-informative, 271 parsimony-uninformative and 1666 constant. The MP analysis of sequences resulted in one most parsimonious tree (Fig. 1) with a length (TL) of 886 steps, consistency index (CI) of 0.702, retention index (RI) of 0.844 and homoplasy index (HI) of 0.298. For the Bayesian analysis, MrModeltest 2.3 with the Akaike information criterion (AIC) was used to choose a substitution model for the two datasets. The model GRT+ I + G were chosen for the combined sequences. The analyses of the final MCMC chains were run from random trees for 1,000,000 generations and sampled every 100 generations. The tree generated from Bayesian analysis confirmed the tree topology obtained with parsimony. The phylogram constructed using combined dataset showed that V. dunalianum var. urophyllum isolate clustered into C. rhombiforme distinct clades with high bootstrap support (bootstrap support BS&gt; 70 and Bayesian posterior probabilities PP&gt; 0.95).</p> </div>	https://treatment.plazi.org/id/03AE6A28AD3B574AFF31FBC3FB52F9D9	Public Domain	No known copyright restrictions apply. See Agosti, D., Egloff, W., 2009. Taxonomic information exchange and copyright: the Plazi approach. BMC Research Notes 2009, 2:53 for further explanation.		Plazi	Wang, Qiu-Tong;Liu, Xiao-Ting;Ma, Hai-Ying;Shen, Xiao-Ye;Hou, Cheng-Lin	Wang, Qiu-Tong, Liu, Xiao-Ting, Ma, Hai-Ying, Shen, Xiao-Ye, Hou, Cheng-Lin (2019): Colletotrichum yulongense sp. nov. and C. rhombiforme isolated as endophytes from Vaccinium dunalianum var. urophyllum in China. Phytotaxa 394 (4): 285-298, DOI: 10.11646/phytotaxa.394.4.6, URL: http://dx.doi.org/10.11646/phytotaxa.394.4.6
03AE6A28AD3B5749FF31F9A7FE93FE5B.text	03AE6A28AD3B5749FF31F9A7FE93FE5B.taxon	http://purl.org/dc/dcmitype/Text	http://rs.tdwg.org/ontology/voc/SPMInfoItems#GeneralDescription	text/html	en	Colletotrichum gloeosporioides	<div><p>C. gloeosporioides species complex</p> <p>The phylogram (Fig. 2) shows the identified isolates in the C. gloeosporioides species complex. The combined aligned data matrix (ACT, CAL, CHS-1, GAPDH, ITS, TUB2 and GS) contained 45 isolates including the outgroup (C. boninense MAFF 305972* and C. hippeastri CBS 241.78*). Forty-three reference sequences were downloaded from GenBank (Table 1) and two isolates were obtained from V. dunalianum var. urophyllum in this study. The multi-gene dataset (gene boundaries of ACT: 1-275, CAL: 276-1008, CHS-1: 1009-1339, GAPDH: 1340-1581, ITS: 1582-2151, TUB2: 2152-2741 and GS: 2742-3522) comprised 3522 characters including the alignment gaps, of which 656 were parsimony-informative, 485 parsimony-uninformative and 2381 constant. The MP analysis of sequences resulted in one most parsimonious tree (Fig. 2) with a length (TL) of 1914 steps, consistency index (CI) of 0.730, retention index (RI) of 0.810 and homoplasy index (HI) of 0.270. For the Bayesian analysis, MrModeltest 2.3 with the Akaike information criterion (AIC) was used to choose a substitution model for the two datasets. The model GRT+ I + G were chosen for the combined sequences. The analyses of the final MCMC chains were run from random trees for 1,000,000 generations and sampled every 100 generations. The tree generated from Bayesian analysis confirmed the tree topology obtained with parsimony. Two isolates clustered with C. henanense and formed a distinct clade with a high bootstrap support/posterior probability value (bootstrap support BS&gt; 70 and Bayesian posterior probabilities PP&gt; 0.95). A pairwise homoplasy index (PHI) test using a seven-gene dataset (ACT, CAL, CHS-1, GAPDH, ITS, TUB2 and GS) was further performed to determine the recombination level between C. yulongense and its phylogenetically closely related species, C. henanense. The PHI test did not find statistically significant evidence for recombination (Φw = 1). Based on the result no significant recombination events could be detected between C. yulongense and C. henanense (Fig. 3).</p> </div>	https://treatment.plazi.org/id/03AE6A28AD3B5749FF31F9A7FE93FE5B	Public Domain	No known copyright restrictions apply. See Agosti, D., Egloff, W., 2009. Taxonomic information exchange and copyright: the Plazi approach. BMC Research Notes 2009, 2:53 for further explanation.		Plazi	Wang, Qiu-Tong;Liu, Xiao-Ting;Ma, Hai-Ying;Shen, Xiao-Ye;Hou, Cheng-Lin	Wang, Qiu-Tong, Liu, Xiao-Ting, Ma, Hai-Ying, Shen, Xiao-Ye, Hou, Cheng-Lin (2019): Colletotrichum yulongense sp. nov. and C. rhombiforme isolated as endophytes from Vaccinium dunalianum var. urophyllum in China. Phytotaxa 394 (4): 285-298, DOI: 10.11646/phytotaxa.394.4.6, URL: http://dx.doi.org/10.11646/phytotaxa.394.4.6
03AE6A28AD365746FF31FA64FD14FECB.text	03AE6A28AD365746FF31FA64FD14FECB.taxon	http://purl.org/dc/dcmitype/Text	http://rs.tdwg.org/ontology/voc/SPMInfoItems#GeneralDescription	text/html	en	Colletotrichum yulongense C. L. Hou & X. T. Liu 2019	<div><p>Colletotrichum yulongense C.L. Hou &amp; X.T. Liu, sp. nov. (Fig. 4)</p> <p>MycoBank MB 824163</p> <p>Etymology:— yulongense, referring to the name of county where specimen was isolated.</p> <p>Colonies on PDA at first white and increasingly becoming greyish white, reverse white to pale grey to dark green; growth rate 10−12 mm ([= 11±1, n = 6) per day at 25 ˚C, attaining 7.0− 8.4 cm in 7 days. Aerial mycelium white to light grey, dense, felty, septate, smooth-walled, branched. Setae present, medium to dark brown, smooth-walled, septate, 80−110 μm long. Conidia not observed on PDA but produced on SNA. Sclerotia and acervuli absent.</p> <p>Asexual morph on SNA. Colonies on SNA flat with entire margin, medium hyaline to pale white, agar medium partly covered with very sparse aerial mycelium, reverse same colours. Conidiogenous cells enteroblastic, hyaline to pale brown, smooth-walled and cylindrical, often lacking a basal septum and continuous with the conidiophore. Conidia hyaline, smooth-walled, cylindrical, with obtuse to slightly rounded ends, contents granular, 11−13 × 4−5 μm (mean 12±1 × 4.5±0.5, n = 30). Spore germination on SNA mostly near apex of conidia. Appressoria in slide culture mostly formed from conidia, dark brown, variable in shape including ellipsoidal, ovoid or slightly irregular, 10−16 × 5−7 μm (mean 13±3 × 6±1, n = 10). Teleomorph not produced in culture after 3 months. Sexual morph not produced in culture.</p> <p>Holotype:— CHINA. Yunnan Province: Yulong County, Lijiang, endophyte isolated from the leaves of Vaccinium dunalianum var. urophyllum Rehd. &amp; Wils (Ericaceae, Vacciniodeae), alt. ca. 2400 m, 20 July 2013, coll. C. L. Hou (holotype BJTC 193; culture ex-holotype CFCC 50818).</p> <p>Additional specimen examined:— CHINA. Yunnan Province: Yulong County, Lijiang, endophyte isolated from the leaves of V. dunalianum var. urophyllum, alt. ca. 2400 m, 20 July 2013, coll. C. L. Hou (BJTC 192, CFCC 50819). Known distribution:— Yunnan Province, China.</p> </div>	https://treatment.plazi.org/id/03AE6A28AD365746FF31FA64FD14FECB	Public Domain	No known copyright restrictions apply. See Agosti, D., Egloff, W., 2009. Taxonomic information exchange and copyright: the Plazi approach. BMC Research Notes 2009, 2:53 for further explanation.		Plazi	Wang, Qiu-Tong;Liu, Xiao-Ting;Ma, Hai-Ying;Shen, Xiao-Ye;Hou, Cheng-Lin	Wang, Qiu-Tong, Liu, Xiao-Ting, Ma, Hai-Ying, Shen, Xiao-Ye, Hou, Cheng-Lin (2019): Colletotrichum yulongense sp. nov. and C. rhombiforme isolated as endophytes from Vaccinium dunalianum var. urophyllum in China. Phytotaxa 394 (4): 285-298, DOI: 10.11646/phytotaxa.394.4.6, URL: http://dx.doi.org/10.11646/phytotaxa.394.4.6
03AE6A28AD375746FF31FA21FC25F7EB.text	03AE6A28AD375746FF31FA21FC25F7EB.taxon	http://purl.org/dc/dcmitype/Text	http://rs.tdwg.org/ontology/voc/SPMInfoItems#GeneralDescription	text/html	en	Colletotrichum rhombiforme Damm, P. F. Cannon & Crous, Studies	<div><p>Colletotrichum rhombiforme Damm, P.F. Cannon &amp; Crous, Studies in Mycology 73: 95. (Fig. 5)</p> <p>MycoBank MB800511</p> <p>Colonies on PDA at first white and becoming greyish white, reverse ivory-white to pale yellow; growth rate 1.7−2.1 mm ([= 1.9±0.2, n = 6) per day at 25 ˚C, attaining 1.2−1.5 cm in 7 days. Aerial mycelium dense, cottony, septate, smooth-walled, branched. Setae present, medium to dark brown, smooth-walled, septate, 70−90 μm long. Conidia not observed on PDA but produced on SNA. Sclerotia and acervuli absent.</p> <p>Asexual morph on SNA. Colonies on SNA flat with entire margin, grey-white, agar medium partly covered with felty whitish aerial mycelium, reverse pale grey. Conidiogenous cells hyaline to pale brown, smooth, cylindrical, often lacking a basal septum and continuous with the conidiophore. Conidia hyaline, smooth-walled, fusiform to cylindrical, with obtuse to slightly rounded or actue ends, sometimes both ends rounded, 12−15 × 4−5 μm (mean 13.5±1.5 × 4.5±0.5, n = 30). Appressoria in slide culture formed from conidia and vegetative hyphae, pale brown, aseptate, smooth-walled, shape including ovoid or slightly irregular, edge entire, 11−14 × 5−7 μm (mean 12.5±1.5 × 6±1, n = 10). Sexual morph not produced in culture after 3 months.</p> <p>Specimen examined:— CHINA. Yunnan Province: Yulong County, Lijiang, endophyte isolated from the leaves of V. dunalianum var. urophyllum, alt. ca. 2400 m, 20 July 2013, coll. C.L. Hou (BJTC 191, CFCC 50823).</p> <p>Known distribution:— Yunnan Province, China; Mirandela, Portugal.</p></div> 	https://treatment.plazi.org/id/03AE6A28AD375746FF31FA21FC25F7EB	Public Domain	No known copyright restrictions apply. See Agosti, D., Egloff, W., 2009. Taxonomic information exchange and copyright: the Plazi approach. BMC Research Notes 2009, 2:53 for further explanation.		Plazi	Wang, Qiu-Tong;Liu, Xiao-Ting;Ma, Hai-Ying;Shen, Xiao-Ye;Hou, Cheng-Lin	Wang, Qiu-Tong, Liu, Xiao-Ting, Ma, Hai-Ying, Shen, Xiao-Ye, Hou, Cheng-Lin (2019): Colletotrichum yulongense sp. nov. and C. rhombiforme isolated as endophytes from Vaccinium dunalianum var. urophyllum in China. Phytotaxa 394 (4): 285-298, DOI: 10.11646/phytotaxa.394.4.6, URL: http://dx.doi.org/10.11646/phytotaxa.394.4.6
